1:- module( bio_analytics, [
    2                bio_analytics_version/2,          % -Vers, -Date
    3                bio_diffex/4,                     % +Exp, -DEs -NDEs, +Opts
    4                bio_p_adjust/3,                   % +Obj, +AdjObj, +Opts
    5                bio_symbols/3,                    % +Vect, -Symbs, +Opts
    6                bio_volcano_plot/2,               % +Mtx, Opts
    7                exp_gene_family_string_graph/4,   % +Exp, +Fam, -Graph, +Opts
    8                exp_go_over/3,                    % +Exp, -GoOver, +Opts
    9                exp_go_over_string_graphs/4,      % +Exp, ?GoOver, ?Dir, +Opts
   10                exp_go_over_string_graphs_multi/1,% +Opts
   11                exp_reac_over/3,                  % +Exp, -ReOver, +Opts
   12                gene_family/3,                    % +Alias, -Symbols, +Opts
   13                go_org_symbol/3,                  % +Org, +GoT, -Symbol
   14                go_org_symbols/3,                 % +Org, +GoT, -Symbols
   15                go_over_plot/2,                   % +GovF, +Opts
   16                go_string_graph/3,                % +GoT, -Graph, +Opts
   17                go_symbols_reach/3,               % +GoT, -Symbs, +Opts
   18                symbols_string_graph/3            % +Symbs, -Graph, +Opts
   19        ] ).

Computational biology data analytics.

Collects a number of biological data analytics tasks. This library provides tools for the bio_db served data, empowering downstream analyses of user's experimental data.

Installation and loading:

?- pack_install(bio_analytics).
        % also installs pack(lib). other dependencies are installed at load time via lib
?- use_module(library(lib)).
?- lib(bio_analytics).

The library comes with one experimental dataset: data/silac/bt.csv which is used in the example files in directory examples/ .

author
- nicos angelopoulos
version
- 0.1 2019/4/22
- 0.2 2019/5/08
- 0.3 2019/5/11
- 0.4 2020/9/18
- 0.5 2023/1/2
- 0.6 2023/6/6
- 0.7 2024/10/7
license
- MIT

*/




 bio_analytics_version(-Vers, -Date)
Version and release date.


?- bio_analytics_version(V,D).
V = 0:7:0,
D = date(2024,10,17).




*/


   61bio_analytics_version( 0:7:0, date(2024,10,17) ).
   62
   63:- use_module(library(lists)).   64:- use_module(library(apply)).   65:- use_module(library(debug)).   66:- use_module(library(filesex)).   67:- use_module(library(lib)).   68
   69:- lib(mtx).   70:- lib(real).   71:- lib(b_real).   72:- lib(bio_db).   73:- lib(os_lib).   74:- lib(options).   75:- lib(debug_call).   76:- lib(pack_errors).   77:- lib(promise(wgraph_plot/2,wgraph)).   78
   79:- debug_call:debug(ba(info)).   80
   81:- lib(source(bio_analytics), homonyms(true)).   82
   83:- lib(gene_family/3).   84:- lib(go_org_symbols/3).   85:- lib(go_symbols_reach/3).   86:- lib(go_string_graph/3).   87:- lib(symbols_string_graph/3).   88:- lib(bio_diffex/4).   89:- lib(exp_gene_family_string_graph/4).   90:- lib(exp_go_over/3).   91:- lib(exp_go_over_string_graphs/4).   92:- lib(exp_go_over_string_graphs_multi/1).   93:- lib(bio_volcano_plot/2).   94:- lib(bio_symbols/3).   95:- lib(bio_org/0).   96:- lib(bio_p_adjust/3).   97:- lib(exp_reac_over/3).   98:- lib(go_over_plot/2).   99:- lib(end(bio_analytics), homonyms(true)).  100
  101pack_errors:message( cannot_map_gids(Org,Gid,Gto) ) -->
  102    ['Predicate org_gid_map/3 could not convert gids from: ~w to: ~w in organism: ~w.'-[Gid,Gto,Org]]